(last modified December 1, 1999)
Submitted to GenBank
LOCUS nuc 16 4125 bp DNA PRI 26-NOV-1999
DEFINITION Genomic sequence of Xp-probe P20 (DXS269); located in intron 44 of
the human DMD-gene.
ACCESSION nuc 16
VERSION
KEYWORDS .
SOURCE human.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4125)
AUTHORS Wapenaar,M.C., Kievits,T., Hart,K.A., Abbs,S.J., Blonden,L.A.J.,
den Dunnen,J.T., Grootscholten,P.M., Bakker,B.,
Verellen-Dumoulin,C., Bobrow,M., van Ommen,G.-J.B. and Pearson,P.L.
TITLE A deletion hotspot in the Duchenne muscular dystrophy gene
JOURNAL Genomics 2, 101-108 (1988)
REFERENCE 2 (bases 1 to 4125)
AUTHORS Wapenaar,M.C., Petit,C., Basler,E., Ballabio,A., Henke,A.,
Rappold,G.A., van Paassen,H.M.B., Blonden,L.A.J. and van
Ommen,G.-J.B.
TITLE Physical mapping of 14 new DNA markers isolated from the human
distal Xp region
JOURNAL Genomics 13, 167-175 (1992)
REFERENCE 3 (bases 1 to 4125)
AUTHORS Wapenaar,M.C., van Ommen,G.-J.B. and den Dunnen,J.T.
TITLE Direct Submission
JOURNAL Submitted (26-NOV-1999) Human and Clinical Genetics, Leiden
University Medical Center (LUMC), Wassenaarseweg 72, 2333AL LEIDEN,
the Netherlands
COMMENT P20 (DXS269) is a genomic deletion junction clone (PstI-fragment)
derived from intron 44 of the DMD gene. P20 thus hybridizes to two
genomic PstI fragments, measuring 7.7 kb (designated P20a) and 2.4
kb (P20b) respetively. P20a is located telomeric, P20b centromeric.
P20a is present in GenBank M86524. P20 detects several RFLP's, one
described in GenBank Z11838.
FEATURES Location/Qualifiers
source 1..4125
/organism="Homo sapiens"
/cell_line="TG2"
/clone_lib="PstI inserts"
/plasmid="pKUN1"
gene <1..>4125
/gene="DMD"
/note="dystrophin gene"
intron <1..>4125
/gene="DMD"
/number=44
misc_feature 1..3003
/gene="DMD"
/note="Region: P20a"
misc_feature 2998..4125
/gene="DMD"
/note="Region: P20b"
misc_feature 2998..3003
/gene="DMD"
/note="deletion junction region P20a/P20b (shared
sequence)"
BASE COUNT 1214 a 755 c 815 g 1341 t
ORIGIN
1 ctgcagttaa cacattttag cagagtgtag gtttatgggt gagaaggaaa tcaatgatgt
61 ttcaatacag ggttcttttc ccatccccct tatttccact tagaactgtc tctcaagtct
121 taatttgcct ctaaactttt ttcccagctt acattctttt ctgaaaaatg caacgacgat
181 gccaatgttt gttgacctga aatacattgt aaaacattca taatactttg agcagagctt
241 ccaaactccc atttgcctct tttatctccc ttaccttggc ccctttttga aggcaatgtg
301 atatttaatc cgtttctatt gatgcttcaa aattattgaa aaactggtaa ttgtattttt
361 ccctttactt atcagttgct agttgacaat gagtgtttgc ccaaacaata accaatcaaa
421 aggtaaaaag gagattccag acatatctga gaagaaattc tttggaagaa gcccgtaaat
481 ggaatgggaa ttcaaacaaa gccgtttcca aaagaaatac taaatggtct ctaaatgcaa
541 aaggattgct ccccaagcat tttatgggag cataaaaagc tcccaacaca ttttatgaca
601 atacttctac tcaatgactt cttgtgttga catatttgtt gcactcgacg ttaatattta
661 cagcttctta tcccaaatat ttacttaact gaagccctga tgtttttaaa aacttttcat
721 ctgtgtttaa cagcccattt tacagaaact tatttgtttc atcaggcaga tatttactga
781 gaacttgcaa gtgccatata ttctaaaaat gctgatgata aaactgtgaa cacaatagat
841 tctcatggtg cttatggtca gggctagcac acacacttgt gaaatgatca ctgatgatca
901 aaggcataaa cactacattt ggaagaaata ccgagggatc cagaagtatc ttggaaacac
961 tagcaagtat agcagatggt gggattggtg cttcaaagaa cttcttgtgg aagatgttac
1021 gtatgtacct tctctgtgcc aggcttctgc taggaagtgc tggagagaaa aagatgtgct
1081 agataccgcc tctgtcctat gtgcttgtgc tttgtgggga ggtgagtagg ataatcccag
1141 ttctcatgca gtgtaatgag taccatgacg gaaatgcact ccaagaacta ggcagcatga
1201 ccagagatag gacatttgag aaagacttca ctcgggtggt actatcttag tctgggtgct
1261 aaaatagatg tgatagatga gtaagggtga cccggaagca ggagggaaag ggaggggctt
1321 tcagaacaac aagtgcgagg acattaaggt gaaatagagt ataatagtat tcccagatcc
1381 ttgggattgt tctccattag gctaaaacaa aggtgttttc tcttctttaa aatttcatga
1441 ctgcagattg cataacagaa ggtcatttaa tagacctcta aactgaagga attcttgaat
1501 taaatcacaa catatcttcc atggccagag aaaccattgc ctccttatgt cgacattact
1561 aacagcacca gcacctgctg ctcaggccag cgggagggtt gggtgttgct gcctaggtaa
1621 tgctcaccaa ctgatgtcct gccatgagta gttttgccaa gttccacaaa aaaaacttag
1681 tgttctatca gcatctaatg agaattacag tcattagtta aataaaagaa ctattagata
1741 aggagcagaa tgaacaacac acaatccatc agcttggtga atggtatcag atggtttctg
1801 ggtgctgggc agctgtgcat ccaagtagac agggagaata tatatgtcct ttgccttatg
1861 tacttgtttc tctaatccaa aggcacagca atccgtggaa gctgctatga taaggtgttt
1921 agtggtgaaa atgtcttgaa agccagtaga ttattaaagt gatgttttta aaaatgcaga
1981 tggagagtaa gtacttttta tctagagtag tagttctcaa agggaggtcc cgggatcagc
2041 agcgttagca tcacttggga acttagacct gcatgggccc cattccagat ctcacttgaa
2101 aactctaggg ggtgtagccc ggcagtcttt gttgtgacca gctctccagg gggttctgac
2161 actccaaatg ttcaagtttc agaacgctac tcacaggcca tcatgctcgg catcacctga
2221 aagcttgtta gaactagaaa ttcttggccc caccccaagc ctactaaatc agagtttttg
2281 ggagtagggc caagaaaact gtgggttaac aaggtctcca agtgattctt attcatgtca
2341 aaatttgaaa agcgtcgatc gaactgttgg ttctcagctt tgattgcgta tctgaatcac
2401 ctggggagac agttgagcta ttccgggccc agatcacatc tagaccaatt gaatcagaat
2461 ctatggaggc aggacccaga catcagtatt ttaaaatatt tcttgaatga tcccagagtg
2521 tagctaaggt tgagaaacac tgttctagga ttaaaggatt aatgtgtttg agagtatgtt
2581 aagatcttag gcaaatcaca agggtgttaa gaactaccat cttcgcaaaa ggagaatgtg
2641 cctcagatat tctggtactg ctttgatttt accttcagta gtcttaccta ttttgagtat
2701 gcttagtagt actaatatga ggcttattac taatatgtta aaatttgtct tttaattaag
2761 tgggtctaaa cgttttaatc tttaatctct gacccaacta gaacttttct aaacattttc
2821 ataatagtct ccaccttgtc ttctgacctt cacttatgtt ctttcagggt tcttcgtgtg
2881 ttactagtaa tagtaatggc aagtgtttat tgaacactta ctatgtgaag attctaactg
2941 gcttttaata atcacatcag ctctgggagg tagaaggtag ggatcctcct tgcttatcag
3001 gtgtataagt tagtaaagat attaaatgct caatctgtta acttttgtga agtggtccca
3061 ctgataaagt gacacctcaa taaaataaaa atttccatta cctcagaaag ctttttcatg
3121 ctaccttcca gtcaattccc agccccaata ggcacctatt cttctgattt atatcaccat
3181 agattagttt tgtcttttta aaaatttgta taaatgaaat catacaaaat gtactatttt
3241 gatcagcata ctacttttga gattcatcca tgtaagtgta tcagctgttc attcctttat
3301 tgatgattaa tattctattg atatgatata ccacaattta tttatctatt ctccttttga
3361 tggacattca ggtggttttc agtttttggc tgttatgaat aagatgctgt ggacattgtg
3421 tacagccatt gtgagcatat gtttcattag ttgagtactc tgtagagtga tgctggtgaa
3481 tgttaaattt atgagatatt gtcaaacagc acctaaacag tttctaaagt ggttgtgcca
3541 tttgcaatgc caccagtgat gatggagagt tccagttact ctacatcttt gtcaatattt
3601 ggtcttgtca gtcattttaa tttttgctat cttacagaat atgtaggtat attgttgtgg
3661 ttttaactta tattcctctg attactagca ctattaagca tcttttcatg gatttattgg
3721 acattcatat agattatgtg tgttgaagat tattaccttt atgattattg ggtgaaaata
3781 gtatcatttt gaggtcattc atataacttg aagactggga atgacaaaca ttttcctgtt
3841 tgttctttct tttactttat ctgagagtct actagaatgc agtgttcgcc tgagcagcag
3901 ggcattagct tgtaaaagct ctgttccttg gcaaccccac caccactaat atgaagtgca
3961 gaacatttga attgtctttg accagcttca gcatcagcac tatttttttt ttttgctaga
4021 cccctagtag gtatttaaaa gtacagaaat agaatttaat catgcttttt accaaatgtg
4081 ctatgctctt agagattctt ttcaacgtgc ataaaaattc tgcag
//
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