(last modified January 07, 2005)
Submitted to GenBank
LOCUS nuc 11 259 bp DNA PRI 19-NOV-1999
DEFINITION 5'DYS-I.
ACCESSION nuc 1
VERSION
KEYWORDS .
SEGMENT 1 of 4
SOURCE human.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 259; 2 to 206; 1 to 252; 1 to 202)
AUTHORS Feener,C.A., Boyce,F.M. and Kunkel,L.M.
TITLE Rapid detection of CA polymorphisms in cloned DNA: application to
the 5' region of the dystrophin gene
JOURNAL Am.J.Hum.Genet. 48 (3), 621-627 (1991)
REFERENCE 2 (bases 1 to 259)
AUTHORS den Dunnen,J.T., Beggs,A.H. and Kunkel,L.M.
TITLE 5'DYS-I, 5'DYS-II, 5'DYS-III and 5'DYS-IV; polymorphic dinucleotide
repeats in the brain promoter region (Dp427c) of the human
dystrophin (DMD) gene
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 259)
AUTHORS den Dunnen,J.T.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-1999) Human and Clinical Genetics, Leiden
University Medical Center (LUMC), Wassenaarseweg 72, 2333AL LEIDEN,
the Netherlands
COMMENT Sequence also covered by GenBank AL050305.
FEATURES Location/Qualifiers
source 1..259
/organism="Homo sapiens"
primer_bind 45..73
/standard_name="5'DYS-I (forward)"
/citation=[1]
satellite 45..222
/standard_name="5'DYS-I"
/note="located 3.6 kb 5' of the Dp427c promoter/exon 1
region"
/citation=[1]
/rpt_unit=ta + ca
primer_bind complement(195..222)
/standard_name="5'DYS-I (reverse)"
/citation=[1]
BASE COUNT 107 a 40 c 34 g 78 t
ORIGIN
1 accattttag ttaaatttat tcctctttta ttcttcctga tgatactgta aatgaaattg
61 ttttctaagt gccattaaca gataaatgga taaaaaagtg gtatatatat atatatatat
121 atacacacac acacaacgga acacacaacg gaatattcat ttatataaaa aaaacttacc
181 atttgcaaca acatggatag aactgaagga cattttgtta agtgaaataa gccaggcaca
241 gaaagacaaa tattacacg
//
LOCUS nuc 12 206 bp DNA PRI 19-NOV-1999
DEFINITION 5'DYS-II.
ACCESSION nuc 2
VERSION
KEYWORDS .
SEGMENT 2 of 4
SOURCE human.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 259; 2 to 206; 1 to 252; 1 to 202; 127 to 206; 2 to
126)
AUTHORS Feener,C.A., Boyce,F.M. and Kunkel,L.M.
TITLE Rapid detection of CA polymorphisms in cloned DNA: application to
the 5' region of the dystrophin gene
JOURNAL Am.J.Hum.Genet. 48 (3), 621-627 (1991)
REFERENCE 2 (bases 1 to 206)
AUTHORS den Dunnen,J.T., Beggs,A.H. and Kunkel,L.M.
TITLE 5'DYS-I, 5'DYS-II, 5'DYS-III and 5'DYS-IV; polymorphic dinucleotide
repeats in the brain promoter region (Dp427c) of the human
dystrophin (DMD) gene
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 206)
AUTHORS den Dunnen,J.T.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-1999) Human and Clinical Genetics, Leiden
University Medical Center (LUMC), Wassenaarseweg 72, 2333AL LEIDEN,
the Netherlands
COMMENT Sequence also covered by GenBank L01538 and AL050305.
FEATURES Location/Qualifiers
source 1..206
/organism="Homo sapiens"
primer_bind 1..35
/standard_name="DMD.PCR11.1 (forward)"
/note="marker DXS1242 / 5'DYS-II / sWXD2450"
/citation=[1]
satellite 1..206
/partial
/standard_name="DXS1242 / 5'DYS-II"
/note="located 1 kb upstream of the Dp427c promoter/exon 1
region"
/citation=[1]
/rpt_unit=ca
primer_bind complement(175..206)
/standard_name="DMD.PCR11.2"
/note="marker DXS1242 / 5'DYS-II / sWXD2450"
/citation=[1]
BASE COUNT 79 a 39 c 28 g 60 t
ORIGIN
1 tcttgatata tagggattat ttgtgtttgt tatacaaaaa tcaaatggaa gtagaatagc
61 taaaatgtat gagtacttgc acacaaagca cacacacaca cacacacaca cacacaccat
121 aaccccttag gaaaacacta tttcagaata gcgatattgg catatttcac atatgctaaa
181 tgagttattc cttatagttt cataat
//
LOCUS nuc 13 252 bp DNA PRI 19-NOV-1999
DEFINITION 5'DYS-III.
ACCESSION nuc 3
VERSION
KEYWORDS .
SEGMENT 3 of 4
SOURCE human.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 259; 2 to 206; 1 to 252; 1 to 202)
AUTHORS Feener,C.A., Boyce,F.M. and Kunkel,L.M.
TITLE Rapid detection of CA polymorphisms in cloned DNA: application to
the 5' region of the dystrophin gene
JOURNAL Am.J.Hum.Genet. 48 (3), 621-627 (1991)
REFERENCE 2 (bases 1 to 252)
AUTHORS den Dunnen,J.T., Beggs,A.H. and Kunkel,L.M.
TITLE 5'DYS-I, 5'DYS-II, 5'DYS-III and 5'DYS-IV; polymorphic dinucleotide
repeats in the brain promoter region (Dp427c) of the human
dystrophin (DMD) gene
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 252)
AUTHORS den Dunnen,J.T.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-1999) Human and Clinical Genetics, Leiden
University Medical Center (LUMC), Wassenaarseweg 72, 2333AL LEIDEN,
the Netherlands
COMMENT Sequence also covered by GenBank AL050305.
FEATURES Location/Qualifiers
source 1..252
/organism="Homo sapiens"
primer_bind 18..48
/standard_name="5'DYS-III (forward)"
/citation=[1]
satellite 18..239
/standard_name="5'DYS-III"
/note="located 11.8 kb upstream of the Dp427c
promoter/exon 1 region"
/citation=[1]
/rpt_unit=ta + ca
primer_bind complement(213..239)
/standard_name="5'DYS-III (reverse)"
/citation=[1]
BASE COUNT 87 a 52 c 19 g 78 t 16 others
ORIGIN
1 aagtgttatt tttaggattt tttaggtata acttacatac aataaaccat acatatttaa
61 aatgttatat atatatatat atatatacac acacacacac acacacacat acatgaaacc
121 atcactacaa caaagatagt aaatatatct attatccaaa annnttncct tttntagctc
181 nnnctnnnna tcnnncnccc ccaccttccc taggcagcca ctgatatgct tattgtcact
241 gcagatatat tt
//
LOCUS nuc 14 202 bp DNA PRI 19-NOV-1999
DEFINITION 5'DYS-IV.
ACCESSION nuc 4
VERSION
KEYWORDS .
SEGMENT 4 of 4
SOURCE human.
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria;
Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 259; 2 to 206; 1 to 252; 1 to 202)
AUTHORS Feener,C.A., Boyce,F.M. and Kunkel,L.M.
TITLE Rapid detection of CA polymorphisms in cloned DNA: application to
the 5' region of the dystrophin gene
JOURNAL Am.J.Hum.Genet. 48 (3), 621-627 (1991)
REFERENCE 2 (bases 1 to 202)
AUTHORS den Dunnen,J.T., Beggs,A.H. and Kunkel,L.M.
TITLE 5'DYS-I, 5'DYS-II, 5'DYS-III and 5'DYS-IV; polymorphic dinucleotide
repeats in the brain promoter region (Dp427c) of the human
dystrophin (DMD) gene
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 202)
AUTHORS den Dunnen,J.T.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-1999) Human and Clinical Genetics, Leiden
University Medical Center (LUMC), Wassenaarseweg 72, 2333AL LEIDEN,
the Netherlands
COMMENT Sequence also covered by GenBank AL050305.
FEATURES Location/Qualifiers
source 1..202
/organism="Homo sapiens"
primer_bind 5..35
/standard_name="5'DYS-IV (forward)"
/citation=[1]
satellite 5..195
/standard_name="5'DYS-IV"
/note="located 4.3 kb downstream of the Dp427c
promoter/exon 1 region"
/citation=[1]
/rpt_unit=gt + at
primer_bind complement(167..195)
/partial
/standard_name="5'DYS-IV (reverse)"
/citation=[1]
BASE COUNT 82 a 13 c 42 g 63 t 2 others
ORIGIN
1 aatgaaacaa agtaatattg ttagacatgt atcctgaaaa aggaaatgaa aaaaatgaga
61 acgaatttta gaaggatata tatgatataa tggtgtgtgt gtgtatatat atgataggta
121 tggtatatgt atatattata tgtggtaata tatacatatt nnagaaggac accatgatct
181 aagaggaacc ttaacatttg gg
//
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